Food Protection Trends - March/April 2021 - 239
PEER-REVIEWED ARTICLE
Paula Huth,1* Samantha E. Wirth,2
Deborah Baker,2 David C. Nicholas,3
Aphrodite Douris,4 Jennifer Freiman,5
Kelly E. Kline,6 Katelynn Devinney,7
Sabine Gläsker8 and Colin Schwensohn9
Food Protection Trends, Vol. 41, No. 2, p. 239-245
Copyright© 2021, International Association for Food Protection
2900 100th Street, Suite 309, Des Moines, IA 50322-3855
New York State Dept. of Health, Bureau of Communicable
Disease Control, Empire State Plaza, Corning Tower, Floor
6, Albany, NY 12237, USA
2
New York State Dept. of Health, Wadsworth Center,
David Axelrod Institute,120 New Scotland Ave., Albany,
NY 12208, USA
3
New York State Dept. of Health, Bureau of Community
Environmental Health and Food Protection, Empire State
Plaza, Corning Tower, Floor 13, Albany, NY 12237, USA
4
U.S. Dept. of Agriculture, Food Safety and Inspection Service,
950 College Station Road, Athens, GA 30605, USA
5
U.S. Dept. of Agriculture, Food Safety and Inspection
Service, 355 E St. SW, Washington, D.C. 20024, USA
6
Pennsylvania Dept. of Health, Bureau of Epidemiology,
Room 933, Health and Welfare Bldg., Harrisburg, PA
17120, USA
7
New York City Dept. of Health and Mental Hygiene, Bureau
of Communicable Disease, Queens, NY 11101, USA
8
New York City Dept. of Health and Mental Hygiene, Public
Health Laboratory, New York, NY 10016, USA
9
U.S. Centers for Disease Control and Prevention, Division
of Foodborne, Waterborne and Environmental Diseases,
1600 Clifton Road, MS-A38, Atlanta, GA 30333, USA
1
I 4,[5],12:i:-
Phylogenetic tree based on core single nucleotide polymorphisms (SNPs) for 236 different Salmonella enterica
serovars. Serovars are colored by serogroup. Photo courtesy of Rachel Cheng, Food Science, Cornell University.
Ability of Whole-Genome Sequencing to Refine a
Salmonella I 4,[5],12:i:- Cluster in New York State and
Detect a Multistate Outbreak Linked to Raw Poultry
ABSTRACT
Whole-genome sequencing (WGS) has proven to be a
more powerful tool than pulsed-field gel electrophoresis
for foodborne illness cluster definition because of improved
resolution. Between November 2017 and May 2018,
the New York State (NYS) Dept. of Health investigated
10 cases of Salmonella I 4,[5],12:i:- with pulsed-field
gel electrophoresis pattern JPXX01.0621; comparison
of case exposures did not identify a common source
of infection. In June 2018, the NYS Dept. of Health's
Wadsworth Center analyzed the isolates using WGS and
defined a subcluster of five isolates related within zero to
six single-nucleotide polymorphisms. The National Center
for Biotechnology Information Pathogen Detection browser
advanced this investigation by identifying additional clinical
and food (chicken) isolates related within zero to eight
single-nucleotide polymorphisms to the original subcluster.
Comparison of WGS-related isolates would support the
hypothesis that illness was associated with exposure to a
kosher poultry product. This outbreak ultimately consisted
of 25 cases from six states. Of 20 cases interviewed,
all reported chicken consumption, and of those able to
recall brand information, 83% cited a brand produced
at a facility linked to the WGS-related chicken isolates.
This paper demonstrates how WGS was able to refine
a Salmonella I 4,[5],12:i:- cluster in NYS to uncover a
multistate outbreak linked to raw poultry.
INTRODUCTION
In the United States, foodborne illness remains a key
public health concern. The Centers for Disease Control and
Prevention (CDC) estimate that annually in the United
States, one in six individuals experiences foodborne-related
illness. The burden of foodborne illness is considerable;
approximately 48 million illnesses, 128,000 hospitalizations,
and 3,000 deaths result from the consumption of contaminated
food nationally each year (2). In particular, nontyphoidal
Salmonella spp. are a common cause of foodborne-related illness in the United States, and worldwide, causing an
estimated 1.2 million illnesses, 23,000 hospitalizations,
and 450 deaths in the United States annually. The source for
about 1 million of these illnesses is through the consumption
*Author for correspondence: Phone: +1 518.473.4439; Fax: +1 518.474.7381; Email: paula.pennell-huth@health.ny.gov
March/April Food Protection Trends
239
http://www.foodprotection.org/files/food-protection-trends/mar-apr-21-huth.pdf
Food Protection Trends - March/April 2021
Table of Contents for the Digital Edition of Food Protection Trends - March/April 2021
Presence of Listeria monocytogenes and Sanitation Controls in Cold-Smoked Salmon Facilities during FDA Inspections
Sensitivity of Planktonic Cells and Biofilm of Wild- Type and Pressure-Stressed Cronobacter sakazakii and Salmonella enterica Serovars to Sodium Hypochlorite
I Read It on Reddit: Food Safety Information-Seeking Preferences and Practices of Young Adults Online
Food Safety Knowledge and Self-Reported Practice among Campers in the United States
Consumer Handling of Whole Turkeys: Identification of Common Mishandling Practices
Ability of Whole-Genome Sequencing to Refine a Salmonella I 4,[5],12:i:- Cluster in New York State and Detect a Multistate Outbreak Linked to Raw Poultry
Beyond the Bio Nadia Narine
PDG Highlight Food Safety Assessment, Audit and Inspection Professional Development Group
Industry Products
Coming Events
Food Protection Trends - March/April 2021 - Cover1
Food Protection Trends - March/April 2021 - Cover2
Food Protection Trends - March/April 2021 - 177
Food Protection Trends - March/April 2021 - 178
Food Protection Trends - March/April 2021 - 179
Food Protection Trends - March/April 2021 - 180
Food Protection Trends - March/April 2021 - 181
Food Protection Trends - March/April 2021 - 182
Food Protection Trends - March/April 2021 - 183
Food Protection Trends - March/April 2021 - Presence of Listeria monocytogenes and Sanitation Controls in Cold-Smoked Salmon Facilities during FDA Inspections
Food Protection Trends - March/April 2021 - 185
Food Protection Trends - March/April 2021 - 186
Food Protection Trends - March/April 2021 - 187
Food Protection Trends - March/April 2021 - 188
Food Protection Trends - March/April 2021 - 189
Food Protection Trends - March/April 2021 - 190
Food Protection Trends - March/April 2021 - 191
Food Protection Trends - March/April 2021 - 192
Food Protection Trends - March/April 2021 - 193
Food Protection Trends - March/April 2021 - 194
Food Protection Trends - March/April 2021 - Sensitivity of Planktonic Cells and Biofilm of Wild- Type and Pressure-Stressed Cronobacter sakazakii and Salmonella enterica Serovars to Sodium Hypochlorite
Food Protection Trends - March/April 2021 - 196
Food Protection Trends - March/April 2021 - 197
Food Protection Trends - March/April 2021 - 198
Food Protection Trends - March/April 2021 - 199
Food Protection Trends - March/April 2021 - 200
Food Protection Trends - March/April 2021 - 201
Food Protection Trends - March/April 2021 - 202
Food Protection Trends - March/April 2021 - 203
Food Protection Trends - March/April 2021 - I Read It on Reddit: Food Safety Information-Seeking Preferences and Practices of Young Adults Online
Food Protection Trends - March/April 2021 - 205
Food Protection Trends - March/April 2021 - 206
Food Protection Trends - March/April 2021 - 207
Food Protection Trends - March/April 2021 - 208
Food Protection Trends - March/April 2021 - 209
Food Protection Trends - March/April 2021 - 210
Food Protection Trends - March/April 2021 - 211
Food Protection Trends - March/April 2021 - 212
Food Protection Trends - March/April 2021 - 213
Food Protection Trends - March/April 2021 - 214
Food Protection Trends - March/April 2021 - 215
Food Protection Trends - March/April 2021 - Food Safety Knowledge and Self-Reported Practice among Campers in the United States
Food Protection Trends - March/April 2021 - 217
Food Protection Trends - March/April 2021 - 218
Food Protection Trends - March/April 2021 - 219
Food Protection Trends - March/April 2021 - 220
Food Protection Trends - March/April 2021 - 221
Food Protection Trends - March/April 2021 - 222
Food Protection Trends - March/April 2021 - 223
Food Protection Trends - March/April 2021 - 224
Food Protection Trends - March/April 2021 - 225
Food Protection Trends - March/April 2021 - 226
Food Protection Trends - March/April 2021 - 227
Food Protection Trends - March/April 2021 - 228
Food Protection Trends - March/April 2021 - 229
Food Protection Trends - March/April 2021 - 230
Food Protection Trends - March/April 2021 - 231
Food Protection Trends - March/April 2021 - Consumer Handling of Whole Turkeys: Identification of Common Mishandling Practices
Food Protection Trends - March/April 2021 - 233
Food Protection Trends - March/April 2021 - 234
Food Protection Trends - March/April 2021 - 235
Food Protection Trends - March/April 2021 - 236
Food Protection Trends - March/April 2021 - 237
Food Protection Trends - March/April 2021 - 238
Food Protection Trends - March/April 2021 - Ability of Whole-Genome Sequencing to Refine a Salmonella I 4,[5],12:i:- Cluster in New York State and Detect a Multistate Outbreak Linked to Raw Poultry
Food Protection Trends - March/April 2021 - 240
Food Protection Trends - March/April 2021 - 241
Food Protection Trends - March/April 2021 - 242
Food Protection Trends - March/April 2021 - 243
Food Protection Trends - March/April 2021 - 244
Food Protection Trends - March/April 2021 - 245
Food Protection Trends - March/April 2021 - 246
Food Protection Trends - March/April 2021 - 247
Food Protection Trends - March/April 2021 - Beyond the Bio Nadia Narine
Food Protection Trends - March/April 2021 - 249
Food Protection Trends - March/April 2021 - 250
Food Protection Trends - March/April 2021 - PDG Highlight Food Safety Assessment, Audit and Inspection Professional Development Group
Food Protection Trends - March/April 2021 - 252
Food Protection Trends - March/April 2021 - 253
Food Protection Trends - March/April 2021 - 254
Food Protection Trends - March/April 2021 - 255
Food Protection Trends - March/April 2021 - Industry Products
Food Protection Trends - March/April 2021 - 257
Food Protection Trends - March/April 2021 - Coming Events
Food Protection Trends - March/April 2021 - Cover3
Food Protection Trends - March/April 2021 - Cover4
https://www.nxtbook.com/nxtbooks/trilix/fpt_20240910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20240708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20240506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20240304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20240102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20231112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20230910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20230708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20230506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20230304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20230102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20221112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20220910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20220708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20220506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20220304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20220102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20211112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20210910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20210708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20210506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20210304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20210102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20201112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20200910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20200708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20200506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20200304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20200102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20191112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20190910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20190708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20190506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20190304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20190102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20181112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20180910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20180708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20180506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20180304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20180102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20171112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20170910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20170708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20170506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20170304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20170102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20161112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20160910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20160708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20160506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20160304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20160102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20151112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20150910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20150708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20150506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20150304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20150102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20141112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20140910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20140708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20140506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20140304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20140102
https://www.nxtbook.com/nxtbooks/trilix/fpt_20131112
https://www.nxtbook.com/nxtbooks/trilix/fpt_20130910
https://www.nxtbook.com/nxtbooks/trilix/fpt_20130708
https://www.nxtbook.com/nxtbooks/trilix/fpt_20130506
https://www.nxtbook.com/nxtbooks/trilix/fpt_20130304
https://www.nxtbook.com/nxtbooks/trilix/fpt_20130102
https://www.nxtbook.com/nxtbooks/trilix/fpt_201212
https://www.nxtbook.com/nxtbooks/trilix/fpt_201211
https://www.nxtbook.com/nxtbooks/trilix/fpt_201210
https://www.nxtbook.com/nxtbooks/trilix/fpt_201209
https://www.nxtbook.com/nxtbooks/trilix/fpt_201208
https://www.nxtbook.com/nxtbooks/trilix/fpt_201207
https://www.nxtbook.com/nxtbooks/trilix/fpt_201206
https://www.nxtbook.com/nxtbooks/trilix/fpt_201205
https://www.nxtbook.com/nxtbooks/trilix/fpt_201204
https://www.nxtbook.com/nxtbooks/trilix/fpt_201203
https://www.nxtbook.com/nxtbooks/trilix/fpt_201202
https://www.nxtbook.com/nxtbooks/trilix/fpt_201201
https://www.nxtbook.com/nxtbooks/trilix/fpt_201112
https://www.nxtbook.com/nxtbooks/trilix/fpt_201111
https://www.nxtbook.com/nxtbooks/trilix/fpt_201110
https://www.nxtbook.com/nxtbooks/trilix/fpt_201109
https://www.nxtbook.com/nxtbooks/trilix/fpt_201108
https://www.nxtbook.com/nxtbooks/trilix/fpt_201107
https://www.nxtbook.com/nxtbooks/trilix/fpt_201106
https://www.nxtbook.com/nxtbooks/trilix/fpt_201105
https://www.nxtbook.com/nxtbooks/trilix/fpt_201104
https://www.nxtbook.com/nxtbooks/trilix/fpt_201103
https://www.nxtbook.com/nxtbooks/trilix/fpt_201102
https://www.nxtbook.com/nxtbooks/trilix/fpt_201101
https://www.nxtbook.com/nxtbooks/trilix/fpt_201012
https://www.nxtbook.com/nxtbooks/trilix/fpt_201011
https://www.nxtbook.com/nxtbooks/trilix/fpt_201010
https://www.nxtbook.com/nxtbooks/trilix/fpt_201009
https://www.nxtbook.com/nxtbooks/trilix/fpt_201008
https://www.nxtbook.com/nxtbooks/trilix/fpt_201007
https://www.nxtbook.com/nxtbooks/trilix/fpt_201006
https://www.nxtbook.com/nxtbooks/trilix/fpt_201005
https://www.nxtbook.com/nxtbooks/trilix/fpt_201004
https://www.nxtbook.com/nxtbooks/trilix/fpt_201003
https://www.nxtbook.com/nxtbooks/trilix/fpt_201002
https://www.nxtbook.com/nxtbooks/trilix/fpt_201001
https://www.nxtbook.com/nxtbooks/trilix/fpt_200912
https://www.nxtbook.com/nxtbooks/trilix/fpt_200911
https://www.nxtbook.com/nxtbooks/trilix/fpt_200910
https://www.nxtbook.com/nxtbooks/trilix/fpt_200909
https://www.nxtbook.com/nxtbooks/trilix/fpt_200908
https://www.nxtbook.com/nxtbooks/trilix/fpt_200907
https://www.nxtbook.com/nxtbooks/trilix/fpt_200906
https://www.nxtbook.com/nxtbooks/trilix/fpt_200905
https://www.nxtbook.com/nxtbooks/trilix/fpt_200904
https://www.nxtbook.com/nxtbooks/trilix/fpt_200903
https://www.nxtbook.com/nxtbooks/trilix/fpt_200902
https://www.nxtbook.com/nxtbooks/trilix/fpt_200901
https://www.nxtbook.com/nxtbooks/trilix/fpt_200812
https://www.nxtbook.com/nxtbooks/trilix/fpt_200811
https://www.nxtbook.com/nxtbooks/trilix/fpt_200810
https://www.nxtbook.com/nxtbooks/trilix/fpt_200809
https://www.nxtbook.com/nxtbooks/trilix/fpt_200808
https://www.nxtbook.com/nxtbooks/trilix/fpt_200807
https://www.nxtbookmedia.com